NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307376_10015557

Scaffold Ga0307376_10015557


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10015557 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6159
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004461Metagenome / Metatranscriptome437Y
F027314Metagenome / Metatranscriptome195Y
F032817Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0307376_100155572F004461N/AMSIVISNLPYGDRRPDLFIDTMVKSAAVLNRFRLVDGVKAKVNVPIFDATLSFGSDLCVFDGASAATIGEKEMTVTTYKWSFLNCKNALETSYRGLLLKKGQNNPETMDAEFKDWVFDYFAKLSAEKALTVAGTALTTEMAADAAVLDYDTDAVLTSANILDKLEGAYETMSDVMLAAVYGDADRDFKPAIFLGTAAMQHYQIAIAGLYTTTPQGVVEGGVPNYYGMEVIHFPSMPANEFMIAAAQNIVMLTDEYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAKNFA
Ga0307376_100155573F027314N/AMACNVTLADISYSCDDVAIGGIVELHVANRTDAIAALTLDAADRAITAATAVSGVSQISFNNKDGFSVFSEVKTVAADGVVSTVPTVSVELPKMTADKITALNDISKGGAELVALIQTAAGTFHVCGLDYGLYAGTVDANSGTGRSEKNRFQLTLTGDELGLSYSISSADFVLATA
Ga0307376_100155576F032817N/AMAFNCSILLSDIDINCSKRVTGGIEKVILLLQKDLTITFDPLDETVVTQVDTNNTVVFEHNIKDGVTSFDENKNISNGLGVVTTNIVVQIPSVDNKVNQIDYMSRREDIVAVLVHNNKSVTISGWMDGLTMNYEANSGTSISEKSNINITLTTESGIASLVLDDKTPFTDQSIFN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.