NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307379_10461092

Scaffold Ga0307379_10461092


Overview

Basic Information
Taxon OID3300031565 Open in IMG/M
Scaffold IDGa0307379_10461092 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1200
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051545Metagenome144N
F089423Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307379_104610922F089423GGAMRHAKYFDKDLYSKWHRLHDGIAMCDVDSVEICMNKGCWKPLAIIEHLYDLNQTKKKYTTIVEHIGRALKVPVFLVYYKKSTGDTLSFRVAQKHPIRTPLTPHCQAEWVDILRSIQLKHKKVCSYE
Ga0307379_104610923F051545AGGAGMTNAGMFEDAERIEYLEEQNKFLKKKLKESINSKVIDTLETDIGIKDWHIQKLKDKIKDLKDEIKDLKDALEKTE

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