NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310886_10074720

Scaffold Ga0310886_10074720


Overview

Basic Information
Taxon OID3300031562 Open in IMG/M
Scaffold IDGa0310886_10074720 Open in IMG/M
Source Dataset NameLab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1617
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6475Long. (o)-79.9369Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021017Metagenome / Metatranscriptome221Y
F043277Metagenome / Metatranscriptome156N

Sequences

Protein IDFamilyRBSSequence
Ga0310886_100747202F043277N/AMKNDSPRGAIFRVEQMRRFAVLLVAVAVPASMAGAAHGTVAKTSGGVYLQLSDGAGFAKVRDRGTFIGRVKRGKIVATSNVNVNGCESRSETNDNMTRCKGREITFNTVGAGRWRLRLRGRGIYGSGFVHGCLTLDGRDTGETGAFRRGLDGDEQPWPHSRTRFTLGSGSC
Ga0310886_100747203F021017GAGGMDETLRHDRTVRLLAARLDALAVASMRVPGGERMYRHHILAAVAATRHAIDLDLLSSAEADSIWADVAKRHPDAGWCRSGPRLAA
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