NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318541_10027915

Scaffold Ga0318541_10027915


Overview

Basic Information
Taxon OID3300031545 Open in IMG/M
Scaffold IDGa0318541_10027915 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2770
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002124Metagenome / Metatranscriptome591Y
F003512Metagenome / Metatranscriptome482Y
F006401Metagenome374Y

Sequences

Protein IDFamilyRBSSequence
Ga0318541_100279151F002124AGGMRLQLTICEPCFGTRAMFQEDEDMADQNEAKTKTIGFLPIEKVQTLKGWEEYVDKSTKLSALRTEAQKVKNSVRDALKERLGESGDMDFAVEGDRIRVFRVFRKQQQGRRTRALDLSSSFREQRLEREAEAKGQCDDRGGCDETEDVAPDLNPITEEAAASLDPVTERLMVLMREKGQR
Ga0318541_100279152F003512GGAMPNQSAAANAHQLATPFHGSQPWEAPDPVPVMRRELKLLLIEMNVLRVEVEQLRAMEREARNTEQFLSASVNRLIESRDHWRQEAERLNALITQVPPWSLFWWSCVDAFKAWRKPTDRGLHWA
Ga0318541_100279154F006401N/ATVDASLRARCFASLECIPTLTLLCHFIDAIKAGDFARAESVRFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIGLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
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Institute for Fundamental Biomedical Research
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