NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318516_10002823

Scaffold Ga0318516_10002823


Overview

Basic Information
Taxon OID3300031543 Open in IMG/M
Scaffold IDGa0318516_10002823 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7319
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000453Metagenome / Metatranscriptome1120Y
F004085Metagenome / Metatranscriptome454Y
F019236Metagenome / Metatranscriptome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0318516_100028231F004085GGGGGMGKILISLAFATALLALASSEASAFLYSSFVCQAVGARSVGWGRSFFIGEAKVIALSRCARRSGICTISYCVP
Ga0318516_1000282312F000453GGAGVRIKFEATDASRKVHKRSSTSHVYSHCLVIHFAAHSPSNLWPKGIAACSHAEWAESRALAERNANRWRKQPDVDTIEILDASQV
Ga0318516_100028235F019236GGAGGMSLAGQASGQLVAVVRTANRIDYWIRRRVHATDLDPSNLWPAQDRPHRSRVSGAPHSKVFPAIDRSVWLSIGNCLRAQYDALAPPMPPHIAALVEQLETGNRWRAMMSVQTMHVQKPHWLDYDPVALAVLVIGIGIIELLALII
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