NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1023980

Scaffold Ga0272428_1023980


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1023980 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6119
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032365Metagenome / Metatranscriptome180Y
F072411Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_10239802F072411GAGMADAPPPAWTHTILTDTDGTCRVEITDEDGAILPVARQVTPGQAERLVERIAREARESHKPVKVVIRDPYFMAATVITLKRQSV
Ga0272428_10239803F032365N/AMPPREPSYVTQLGSILRRQNTSALRVFLLQSAERFGDVRQVEDVQAKSDDELEELLHRMIVARPDLADLHRASREWLFRRGIDTFGESGEHRN

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