NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272428_1007046

Scaffold Ga0272428_1007046


Overview

Basic Information
Taxon OID3300031520 Open in IMG/M
Scaffold IDGa0272428_1007046 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Finger Mt nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16542
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)161.57Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056743Metagenome / Metatranscriptome137Y
F073690Metagenome / Metatranscriptome120Y
F088622Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272428_100704611F088622N/AMDAWPQIPGGDTLAIPEGREGHQLDVYLTNGELIDVRLDGESVHPTWFKIEWKETGEVSAKVKGVRLATRFGDVINLHQAGSA
Ga0272428_10070463F073690N/AMFNRLNRALQQALDPSKPDPQARQPTVETLLPGDVVSFWDGGDHVAQAVLDCTEDLNGRETDWHWTLLDEGKVLEITPEGTVLYERTVVLHQSSAEFETLTADAEQGGVLKAFEARVRQGTAARNPTLFEYDGRTYRVVSTGIFAARPAEQPVFPNVEVWRDINPSDPGDNVYFELEPTEDVPAVQSGSEVLGIWTTHIALLFGRPLRPGDIQAIYPRAEPDPQHR
Ga0272428_10070464F056743N/AMSDDVTRFFQALGSTLLWSLVSIAIVAVVFELLEKRYRMVDEIFKENSVAAAILAGSFVLGIFYTVVQIVIH
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