NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10335755

Scaffold Ga0307488_10335755


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10335755 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)958
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F000896Metagenome / Metatranscriptome845Y
F019731Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_103357551F000302AGGAGGMIETMTQDTKDRIRELEGQKVILEDRLEHLGYANNLVKMHEVEEQIFEIEDTIKKLIS
Ga0307488_103357553F019731AGGAGMADLDNILSNIDLEEQKMETEEKDWYCGTCEHGPMMDNDTNCSRCGERHIASRHQEEMTGWEDEDIEAEVEEIF
Ga0307488_103357554F000896N/AVEPQVSTVLKIQRLRTRGETIMKTDKINMVINLSILALLIYLAVAVKSLQKEVFWDKSIMKPAIGEYHGFAEGKIEMKYNVQELLNNVLKEAINNQQGEQ
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