NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10238717

Scaffold Ga0307488_10238717


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10238717 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1205
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F041486Metagenome / Metatranscriptome160Y
F096209Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_102387172F041486GGAMITSTIFGFIMTIVGINETTVTGYKILTTANNINEKTEKKEWKASLHEEVQQILKDAIREAGK
Ga0307488_102387174F096209GGAGMTVAIQTKSIQEIFEDMTESYSLGEYLDGHTNYGEDALMSADKFADRFQHICFGFGYREAEIIPQKHEIKEWCQEHLDKLESRFR
Ga0307488_102387175F000379N/ALTKGVEHMKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTKEDAMTVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWHKEVMRKDVGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGVAIESIREVLEMEKA
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