NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10203056

Scaffold Ga0307488_10203056


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10203056 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1341
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000980Metagenome / Metatranscriptome814Y
F007470Metagenome / Metatranscriptome350Y
F042890Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_102030561F000980N/AIEYTIKDGYGWPAGEMNLTCRCNSNCTLLSVVDATIDTSTTTKEDKMEEVTSTVDLSQNYNPDLLVTYKVIRGYSDAEYATSKIASLEWDLHNGRQSQKTVSMLQDKINTVKDIITEAYADSDDQETLRSIAEALGIPLTRTIEWTASIEVSGTMELDLLSDYDTDIESEITDNLYVESQHGNIEVIDQEVCHVREC
Ga0307488_102030562F000311GGAMYFELTAPDRLSMEMAYWDAQMIGLDPTALTPLTFNIGTGSIEKVSRIRDKYNLIESYTSDYEPTGYTGR
Ga0307488_102030563F007470GGAGMDYQDGFEDGVKFAREVIVTNIRLWAEKTDDGPAYDEVADLLEFGTVDYDL
Ga0307488_102030565F042890GGCGGMGDRANFVFVQPNGESIVLYGHWAGYEMLQNLAEAAIKAQGRWSDPSYATRITISHMI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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