| Basic Information | |
|---|---|
| Taxon OID | 3300031519 Open in IMG/M |
| Scaffold ID | Ga0307488_10012028 Open in IMG/M |
| Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7012 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015477 | Metagenome / Metatranscriptome | 254 | Y |
| F025294 | Metagenome / Metatranscriptome | 202 | Y |
| F071194 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307488_100120281 | F015477 | AGGA | MEMEIAKAQNEIRCAKADVEKASNRLAFVTSAIHNLKDRLDTPNIEL |
| Ga0307488_100120287 | F025294 | AGGAG | MEASNDTAVQPDAVEPVTDTVETEATEQSVSSGTKSDNTTPSVEIRDGKTFVDGVRVYTRDDTNRIAANAKNEVQKNILNELNVDSIEQVKQVVSTLQEVNSNEGESLNVNSLRDAVKKREATVEELKQQVTSLKTDLLLKDHMSQLQNAMPGNWSAQQKESVVKLMKADNMLAVEGDTFAIRNGNDFLTTDGETPDYAKAVEIVGRDKLGLSFGKKGVDLQYGETTTATKTGATAPVDENKLTSSTEYRSAYMRIRQYQPTLSRSQISDNMVKAELKSMGK |
| Ga0307488_100120288 | F071194 | GGAG | MAKPFNYMDFVVSSHPSYNRYLNDWLLSERSLYGGVEYREGEYLKAYTSDFNTPSEIINTYDVDENGNQLNSYRSQVQRANSPQDANDGGSGYASNFYYEKLQNVPVFPYARLYTSEYNAILFRSPPSRNLPDTPEVEAFVKNTDGQGNSLNEFMSQVDTFTTTFGVVWISCIKTVGSDVPKWRMHKPTDVTNWSYTYNTEGDLELNRIIIRISSEPDMEVYQYITADTMDTIFRPLVEEDELMFEVPEGAEKHEGEDSYFYRISQDNPLGYIPVRPVYQSTPIQNGIGHTPLFDIAQIQRSVYSDMGEIYSAVSYGAHPVNIVDEDTLNRNGNSVGAEPGAVIITGASLDGQPNYVYNFVSPSLDSVTELRQIMDQKISKMNEIAMIRSEELIKASRSGVQIEQYDSKLEAFIRKKATAMENAEYNLWKIWFDWMDQSIPDDLTISYNRLYSQKGLEHEIKEMNTLLDAYERYHSVFLDESVEYTIRDYTTEAEAEAEAQRLGGTGTHIHTREDGLVTYMPFATHQEYELRIEMATGEQMHEQPQFKEQLKDKIKMRLTQLIDSTYSNNSL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |