NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10009524

Scaffold Ga0307488_10009524


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10009524 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7888
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011848Metagenome / Metatranscriptome286Y
F026890Metagenome / Metatranscriptome196Y
F054080Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1000952411F011848AGGAMSNKTPYEIRLDLVREAKEILQAKAKNPEDMPTTEEVLREAELLNEFVSKKPFADK
Ga0307488_1000952415F054080N/ALIKDAVKAVLGVGTKSESKIKITPLRIILFAFLVASLFLGTISMLLFLASLIISA
Ga0307488_100095242F026890GGAGMLYEIYQIQVTDEIHNYVNSNEGGHTGAAKKYPLYHAKMETMHGRGDDRKIDFKTEYFSHFTKVCEVDGRYNGLSSGDIDYTVKSKDEVFGILNQQYLDEDTMEDIVFDSHVSGYTMKSFVREGKTIEYRNMHSLSVGDIVAEVPQVGYEVMEVADIVKQTRYFIVEGCGFTDITNIIDNSDVAVNRIAEAV
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