NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10005326

Scaffold Ga0307488_10005326


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10005326 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10635
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (14.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F017499Metagenome / Metatranscriptome240Y
F024797Metagenome / Metatranscriptome204Y
F032332Metagenome180Y
F051263Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1000532625F051263N/AMNISNFKLFSLTEADKHEFNPNETAERLKRREQQNIERFRAAQEREDAFGVTYYKYRIAIDKIDLQKLKLQTQIHQLKQKYKK
Ga0307488_1000532627F024797N/AMSEFFRTQMGRKLIDGDIPKLVNVLERIANQMEKKNKLEEKKFILEEKIQKLSIRESKNK
Ga0307488_1000532628F008425N/AMSTKDITYKQFVDYMDKGNKVYMKKPKSWQKIWFWWESKREKWFLNKAFEKREGGRVITEKSVWITAKQMESHLDFMKRQGYKYHIDE
Ga0307488_1000532631F032332N/AMEQGSGFNDEFIRSLLLNLEHSDFNQFMDLSYHVLMQSPSAVLKRGDSIKTKIESIDGLIKYFESIEEYEKCTNLQKLKSMLFLNTSFDDDDDS
Ga0307488_100053265F017499N/AMSRYNSRMHGVETDNLHVDINWGFDHVLGYWYDIIETKDGEETIIEEWSTKLNGGSRGKMLEFLIKYNLSEEHRSMVALDMEF
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