NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10000971

Scaffold Ga0307488_10000971


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10000971 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23863
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (10.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002033Metagenome / Metatranscriptome601Y
F029449Metagenome / Metatranscriptome188N
F051960Metagenome / Metatranscriptome143N
F095562Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1000097131F051960N/AMSKENETKVVEMATVKAPKTLEQLKTREAELDQINEDLINEMQIREYPVDFKTKKVFDRLLKFLEKDAPWGHTTATGLIMLYHNLRECKEIVKGKEFDGIVAVRSTSVTILWQMVTKMTGSGFYEAKSFVELMANVGESLSTAVQKVQEDNQSLRDNHSELAKVQQEISELEQQEMVEGPTAE
Ga0307488_100009715F095562N/AMEQNNDSNILRSQVNKIENEVKNLTKEKEVIQNECKHKGETFVQFNERNSMKKYCSVCKRELGYPTKAETDIFLGKK
Ga0307488_100009718F002033N/AMSKVNNFFNTHGIKIIVVLVLLSYFKSCNIDSDVERIKKEQRILTTEIDTLSSQIINEEEMIYLIKTVPAWKTLRIEEISDKERISINALEEKEN
Ga0307488_100009719F029449N/AVASRVPIIPGVPTPSDPQCSLTYCGRIIAQVDCIKYIMQGTTACIDIQLFGSNDLPLNLNNFCDIQIQLTNELECVIANFWYPDVPVGSKGFLIDILQFTDDSGVIHNEGLIRICLSAACTKATGPGAISAEILLTECAGGNTGDPTGVGPTGAFPPGFEEVFGIPCLWVATILESKIAKNGGDSGCSGGFVTGVI
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