NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10000758

Scaffold Ga0307488_10000758


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10000758 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26840
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (12.20%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006798Metagenome / Metatranscriptome364Y
F008563Metagenome / Metatranscriptome331Y
F014036Metagenome / Metatranscriptome266Y
F026041Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
Ga0307488_1000075813F026041N/AMIKIIKEKPIKSTTKVEGILVQVTGGQWYGITIFQPARNPWIGRAGKSTTTGKMDFGRGTELFQQFYTAKPNFEELKIMLVSVLNGAEPAKYEISY
Ga0307488_1000075814F014036GGAMEMFGILFILVLSFVFHCVVYEDDYIKKWYWKILIGSGIIIISIAAIMGY
Ga0307488_1000075816F008563GGAMRKIKIISHMGIAFSTIGGQKYLFPGWIPVEDHISFNDVEVTNPYANQKSETYTITGSRGDKYTVTNRNGKFSCDCPAGKFRGSCKHSTQVQKELSLVE
Ga0307488_1000075841F006798N/AMKKIYNTSGANSNGNMNMKLQYIKQEKVVDFINGMDEVTTDSILGDESIVELLTGSVPQQIKDQDNPLGTMESFLQLFIDRGEYEVCQQLIDVHPELVHDFFIEDC
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