| Basic Information | |
|---|---|
| Taxon OID | 3300031519 Open in IMG/M |
| Scaffold ID | Ga0307488_10000372 Open in IMG/M |
| Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36108 |
| Total Scaffold Genes | 53 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (54.72%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017577 | Metagenome / Metatranscriptome | 240 | Y |
| F028966 | Metagenome | 190 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307488_1000037246 | F017577 | GGAG | MATTFPSITPTRRSFVAPTWPTKTQASQSGVITRRLWGSRPSQAKLSLTFGNVNDTNTAAILSAYNSAKGSVDSLTLPTQIFAGADATLESWLNASATGAGLLWSFSEGSSPQVESVAPGRSNVTVELTAELRMS |
| Ga0307488_1000037249 | F028966 | AGG | MSAYAFVNYVRFKTQADAYTGTPYQNFSVNQTRTYSGVTYSFAPFAVSSGGGARGGERSNAALVAGTDAISVNLFAEAVQNRYILEIKTVSLDPLTFADEALISTETWRIASYEMDLTTVTMRLTSPLDAVKAQMPRRTLSTALVGALPTSGALVVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |