NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272437_1116164

Scaffold Ga0272437_1116164


Overview

Basic Information
Taxon OID3300031472 Open in IMG/M
Scaffold IDGa0272437_1116164 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak red sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1726
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)159.06Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016802Metagenome / Metatranscriptome244Y
F064235Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0272437_11161642F016802GGAGVCLENGMCEGGIDGSRLQLLTVCLSDDQAGEISDSLGRPVAPGPPVVSHLRPSEARALAFELLELAELADRKSEEQR
Ga0272437_11161643F064235GGAMIAVRPMVVQLRLDLAESPAPAEALWELVGDEHREAASTLLAALIAQTVVPRAVGDELASVGSERVPGERHV

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