NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1002591

Scaffold Ga0272432_1002591


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1002591 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21179
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F021684Metagenome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100259112F021684N/AMYNKHSKTIIEVSEQDKVYIIKYIAKSLNEFTLISTIYTSYSEIIFSVIASDTSLYV
Ga0272432_10025915F021684N/AMCNKHDKTIIEALKXDKVYIIKYIAKSLNEFTLIFTVYTSHSETVFFVIALNVSLYV
Ga0272432_10025917F021684N/AMYNKHDKTIIEILKXDKVYIIKYIIKSFNKFTLISTVYTSHSEIIFSAIALDANLYI
Ga0272432_10025919F012415N/AVWCHLLTGYEPGLVRDNLRKMVPRPPLPVIQVYGEGVSPKGHKFEPLSVRTLYTCGSVAGRLRVRESVRYITHDSCAISVVPPFNNLN
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