NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1001030

Scaffold Ga0272432_1001030


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1001030 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40179
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.82%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021684Metagenome217Y
F034416Metagenome174Y
F059495Metagenome133Y
F096304Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100103019F034416N/AMFILAVKVIERIEERFVLTIIINNDEKDSSINELNSTAIKLCIELLSDHYFSDNDLYNDSDYKNNINFRLYNYD
Ga0272432_100103027F021684N/AMYDKYSKTIIEASEQDKVYIVKYIVKSLNKFTLISTVYTLHSETVFLVIALDASLYV
Ga0272432_10010305F059495N/AMMFKDEKFLNNNFINEFVLNDLIDDNEDDKKNIKFINDKESSKKDNK
Ga0272432_10010306F096304N/AMKTVLGREKTAVVERIFRKTFKKEKIDVDKKKKENNVIDIEKNTKAFKLAHYXKSGSKLNFNI
Ga0272432_10010307F059495N/AMMFKDQKFLNNNFINKFIFDDLINDDEDDKKNIEFISDEESSKNNNK
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