NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000615

Scaffold Ga0272432_1000615


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000615 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58793
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021684Metagenome217Y
F059495Metagenome133Y
F064251Metagenome128Y
F094619Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_10006151F064251GAGMIFIERIMSTCTICLSSESNTSTLTAVNLSIIKLMTETLLFKTEENSVNLLH
Ga0272432_100061511F094619GAGVTASLKQFSKSDMQTYKFKLMSSHSVITLSEKEITDNLLLKLIIINFNHNVLKLFSYVKISVNKISHLDMSILIKKVKIFLYIKILKRRQKNNNIDFDKLIIKILKVILILTAFTVNDESNKYSVKTDISTSLIYAEAVRDLI
Ga0272432_10006152F021684N/AMYNKHDKTIIKALKQDEVYIIKYIAKSLNEFALISTIYTSHSEIIFSAAASDISLYI
Ga0272432_10006159F059495AGAAGMNVIKDVDKAYIMMSKDEKFLDDDFIDKFVLNDLINDNKDNEKNIESISDEESSEKNSK
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