| Basic Information | |
|---|---|
| Taxon OID | 3300031470 Open in IMG/M |
| Scaffold ID | Ga0272432_1000284 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 96235 |
| Total Scaffold Genes | 113 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (50.44%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -77.9 | Long. (o) | 160.7 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012415 | Metagenome | 280 | Y |
| F048683 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272432_10002841 | F012415 | N/A | MIAMLLVWCHLLTGYEPGLVRDNLHKIAPRPPLLVVQVHGERVSPKGHKFKPPSVRTLYTCGSVAGRSRVRGSVRYITHDSYAISVVPPFNRIYNNLM |
| Ga0272432_10002842 | F012415 | N/A | MLLVWCHLLTGYEPGLVRDNLRKMAPRPPLPVVQVHGEGVSPKGCEFEPPSARTLYTCGSVAGRSRVRGSVRYITHDSYAISVVPPFNNNYNLIVLYDSVSSSNVD |
| Ga0272432_10002845 | F048683 | N/A | MFNIELNLFSIEMTEKKETSVKIKNELLCLKNKVEDILNYIIYKDKLYYL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |