NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000239

Scaffold Ga0272432_1000239


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000239 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106891
Total Scaffold Genes126 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (65.87%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048684Metagenome147Y
F052972Metagenome141Y
F064251Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_1000239126F064251N/AMSTCAICLSSESNVSTLTAINLSIIKLIIEALLSKTEEDSVNLLY
Ga0272432_100023982F052972N/AMNSLETDSHIVMSRSHYNRDLLHNSELSTEHRTLSFFNEIVVKENTEKVYALYCHYINLHFNEENQT
Ga0272432_100023985F048684N/AMFDFTELLCYKNKIYILSDEVVKNELMKLHHDDVLAEHYEVDRTINLLFRKYY

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