NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000221

Scaffold Ga0272432_1000221


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000221 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113024
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)80 (62.99%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F048683Metagenome147Y
F048684Metagenome147Y
F052972Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100022164F052972N/AMNFLETDNYIVMSKSHYSKNLLHNSKLSTEHKILSFLNETVTKKDTEKVYTLHCHYINLHFNEENQT
Ga0272432_100022166F012415N/AMIAMLLKWCHLLTGYEPELVCDNLCKVAPRPPLLVVQVHGERVSSKGHEFEPLSVHTLYTCRLVAGQLWVRESVRYITHDSYAISVVPPFNKYIN
Ga0272432_100022173F048683N/AMSDIELNFFLIEIIKKKDILIKIKNRLLHLKNKVEDTLDYIVHKDKLYYL
Ga0272432_100022197F048684N/AMFNFIELLCHKSKIYILSDKAVKNELIKLHHDDVLVEHYEVDKIINLLFRKYY
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