NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000215

Scaffold Ga0272432_1000215


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000215 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)115898
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (44.94%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F021684Metagenome217Y
F048684Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_100021511F021684N/AMYDKHSKTIIEVSEQDKVYIVKYIIKSLNEFALISAVHTLHSEIIFSAAASDTSLYV
Ga0272432_100021512F048684N/AMFNFIKLLYHKSKIYILSDKAVKNELIKLHHDDVLTKHYEVDRIINLLFRKYY
Ga0272432_100021540F048684N/AMFNFTELLCYKNKIYILSDKVIKNELIKLHHDNVLAKHYKINRTINLLFRKYY
Ga0272432_10002158F012415N/AMLLVWCHLLTGYEPRLVRDNLRKMAPRPPLPVVQVHGEGVSPKGREFEPPSARTLYTCGSVAGRSRVRGSVRYITHDSYAISVVPPFNILH
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