NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272432_1000078

Scaffold Ga0272432_1000078


Overview

Basic Information
Taxon OID3300031470 Open in IMG/M
Scaffold IDGa0272432_1000078 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley nord
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)210947
Total Scaffold Genes247 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)137 (55.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.9Long. (o)160.7Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012415Metagenome280Y
F048684Metagenome147Y
F094619Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0272432_1000078100F094619N/AMQTYRFRFMSSYSVVMLSEKEITDNLLLKLIAINFNYNALKLFFHIKISVNKISHSDVNISIKKVKTFLCIKILKRRQKNNDTDFNEFIIKILKIMLTLIAFTVNDESNEYSVKTDILTSLIYAEAVRDLI
Ga0272432_1000078102F012415N/AMLLVWCHLLTGYEPGLVRDNLHKVAPRPPLPVVQVHGEKVSPKGHKFKPLSVRTLYTCGSVAGRSRVRGSVRYITHDSYAISVVPPFNNL
Ga0272432_1000078106F048684N/AMFDFTELLCYKSKIYILFDKVVKNELIKLHHDDVLTEHYEIDKIINLLFRKYY
Ga0272432_1000078116F012415N/AMIAMLLVWCHLLTGYEPGLVHDNLHKTAPRPPLLVVQVHGEGVSSKGHKFEPPSVCTLYTCRSVAGRLQVRGSVRYITHDSYAISVVPPFNKKQDSNIS
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