Scaffold Ga0307513

Basic Information
Taxon OID	3300031456 Open in IMG/M
Scaffold ID	Ga0307513_10000022 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	222771
Total Scaffold Genes	296 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	179 (60.47%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

222771

Total Scaffold Genes

296 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

179 (60.47%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Washington
Coordinates	Lat. (^o)	45.9233	Long. (^o)	-120.701	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Washington

Coordinates

Lat. (^o)

45.9233

Long. (^o)

-120.701

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F093012	Metagenome / Metatranscriptome	106	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000002238	F093012	N/A	VSGPGTRSLLYEAQSSCYSRERSPQIDRIYEKLTATLTSATPTTDEIDRALEAMELIAPLCENVIAEKSYQLFHVAMRTPVSPAYSPEKKWEASRLTMRGTYKWDAFLPWVEDPHDILVFLDHHFDLATRCDQNQDEPIQNALRALAYASGPATIEALERFDPIEPSFVRGICYVFQDDKPFQLRKAALFFLPLIGDRWFNTPHPIMEPDQMRSLCVDWASAVDGIEHTNDVQKAALAVLFGMINSSHWRPHIVTEKWKLLEYSTSVPDDSLPLRRCIDNPELTHAIAEVEDPAAMFLWSAILWLKYKELTPQVQEQLEIITKEVVQGRRRTDLDAYLSMMDSELRKAEDALTQYNTLSTDPAALALRTKIDNLQQARTSLVALKGG
Ga0307513_1000002244	F093012	AGGTGG	MRSLRYEAESSCYSQECNPQITRIYDKLTAVFGGITPATDEIDRALEAVELITPLCENEIALESYQLFHVAMRTPVSLTYSAEKKWEASRLIMRGAYKWDKFLPWVEDPQDILMFLDHHFDLATRGGQNQDEPIQNALRALAYASGPVTIETLKRFDPTEPAFVRGICYVFQDDKPFQLHKAALFFLPLIGDGWFNTPHPIMEPDKMKTFCINWASAIDGIEHTFDVQKAALAVLFGMINSPHWRPHIVMEKWKLLEYFTSVPDDSQPLRRCIDNTDLMDAIANVENPAALVLWLAILWLKYKELIPQVQEQLETATREVAQGRRKTDLDMYLSLMDSELRKAQDALTQYDLWSTDPAALALRTKIENLQQAKAALVALRGG
Ga0307513_1000002249	F093012	GGAG	MELIAPLSENEIAQRSYHLFRVVMKAPVFLAYSQEMKWEASRLALHGAYKWDKFLPWVGDPQDILTFLGHHFDLVGRGGRNQHVPIQNALRALVHAPGPATIEALGRFDPTQPSFVRGICHVFQDDKPFRLHKAALFFLPLIGDRWFNTPHPIMEPDQMRSLCMDWASVVERIEHTYDVQKAILAVLLRMINSPHWCPHIVPENWRLLEYFTLVPDDDAPLRSCLDNPELVDAIKDVEHPDALVLWLVILCWKHEELIPQVQEQLETVMKEIVPGDSRSYLDMCLLVVDSRLKKAKDALQRDTNQWSTDPAANALRTKIDHLQLAKVSLVALRGN
Ga0307513_1000002266	F093012	N/A	VGRSGTCSLLYETESSCYSHDSSSQIARIYEKLTETFRSAIPATSEIDRALDAMELIAPICKNGIAKKSYELFHVIMQTPVSFVCSQEQKWRASRLALHSAYNWDGFLLPWVGDPQDILIFLDHHFDLATRDRQNQDEPIQNALRALAYASSPVTVEVLRRLDPTRPSFIRGICYAFQNDRPSRLRKAALLFLPLIGDRWFNTLRPIMGRDRMRSLCVDWASAVDSIEHTPEIQKVILAALFGMINSPHWRPHIVTNKWKLLEYFISVPDDSRPLRRCIDNPELIYAILKTADPTVVVLWLEILWFKYDELVPQVQEQLETVMKEARGERRESLGMYLSAMDSELEKAKDALKEYDGRSTHPAAITLRTKIYNIQQARVSFITLTEKSMRNHHRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307513_10000022

Overview

Ecosystem & Geography

Associated Families

Sequences