NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307960_1035468

Scaffold Ga0307960_1035468


Overview

Basic Information
Taxon OID3300031397 Open in IMG/M
Scaffold IDGa0307960_1035468 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #542
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2335
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004689Metagenome428Y
F005137Metagenome411N
F014810Metagenome260Y

Sequences

Protein IDFamilyRBSSequence
Ga0307960_10354681F005137N/ANKTVTASSYILLATDVDKFLIFSNACTVVVPNGLAANLEFQGKQGGTGQVTFSAESGGTLNVPSVFLAETAEQHCFFGIRTDGSDVSTILGTLKLS
Ga0307960_10354684F004689N/AMRKKLTYLLFFIPLISLSQGISLNVSQDARLALVGDERGNKAFTTNVNVGAEFRGLQKGSSYFLMRPELEYADLKGGELYRMTANFGYTFNKWIKDVDFTVTLGGGMLSRYELGGLHTQANLQTTWYFTKGIGLFLDSEFVQRIDLPNKFVGYSGKIGIKIILR
Ga0307960_10354685F014810N/AMSIFSENLGVIITGITGAIGGIAAFFGGKKSRESNANIEIGKAYELMSKQNNAFIITMTDKIDKQTKKIEHL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.