NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307934_1004743

Scaffold Ga0307934_1004743


Overview

Basic Information
Taxon OID3300031329 Open in IMG/M
Scaffold IDGa0307934_1004743 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #90
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5795
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034413Metagenome175Y
F034773Metagenome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0307934_10047434F034413GGAGMVISQQQIENVLAGTADYNFLPKALQSAIRLPIYYRACAVLAEPTRGARRAKLDAEPESVRALVEAEALRLHKLRPKGLQ
Ga0307934_10047439F034773AGGAMTSPQILADKLTHAKRESKALKAQLQASKLKAEELLAAFDKSVYTPEVIARRN

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