NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307431_1014090

Scaffold Ga0307431_1014090


Overview

Basic Information
Taxon OID3300031278 Open in IMG/M
Scaffold IDGa0307431_1014090 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-170
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3002
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.759Long. (o)-70.891Alt. (m)Depth (m)1.7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307431_10140902F031354AGGAGVKTTIDILDILYPVINVASVKTTIDGGIYRNKKPLNSELQDIVILPLSNYVGSEITNDSVFIINCFCKNFVNSTPDITRLRAVTDAVVAVIEGYNATNNYYVFDITSQILLQDNEQISMSYTSIRLQCYIEK
Ga0307431_10140904F091296GGAGMVIERYPHTATISYYGAGTINSIGIYTPGTLITIGIVCNIQPNSTKYIIGESGNMIGYNWYVMSPLFTGVNSVPDDAKLTFFNKEHVILQLFPYQKHVEVKC
Ga0307431_10140905F059653AGGAGMTNKEALQSLTEYSNNNLLEKLLLDRGVATGGTYAAANAKEIDLAAASLYFTLAAHPELREGAFSVKYSGAQLIAMAKRILQKYGEDKATVNGVAIW
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