Scaffold Ga0265327_10004020

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265327_10004020

Scaffold Ga0265327_10004020

Overview

Basic Information
Taxon OID	3300031251 Open in IMG/M
Scaffold ID	Ga0265327_10004020 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13385
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (27.27%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location Name	USA: Seattle, Washington
Coordinates	Lat. (^o)	47.6516	Long. (^o)	-122.3045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022249	Metagenome / Metatranscriptome	215	Y
F050334	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265327_1000402012	F050334	N/A	MEFLVIMGIGTLVAIWIVANLPKPRGLRREKVSFQEKPFQTPAWRKDLSEFYSTDDFDYLRKLERHQNDPHHWPCPFPPQG
Ga0265327_1000402014	F022249	N/A	MLKRNGEDCEHPVPNYPGLLTASEFKSYNVAVPLVAVEVRLFNERATTLSEIEKQSAGTAEQVTSQVARDLPSLTVKGKPESEWKIRHVLIKSARSEVLFCSREHEGEQQFGVVEKFDPQSPFARVHGDTDLQMTGNNAFVLLQNYVESERSVLQLFRKDIEATVEENLSEKFPNQNHSRVVRAISARCGSQVPVESEKEKPAKSVKIRM

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