NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302324_100214584

Scaffold Ga0302324_100214584


Overview

Basic Information
Taxon OID3300031236 Open in IMG/M
Scaffold IDGa0302324_100214584 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3052
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084158Metagenome112Y
F099197Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0302324_1002145843F084158GGAMPNRIRSKKPIRFRNRGDSPLSPATPDKRELLLKLAQELQEMMIESMEGIGVSRKEQMLSYRRASRGLGGKERPSAPLIDRISGIADLLSSWRRDRRYLQADGSPRVLPIQGNGVSLESLGKKFVPDMSLSEVLVAVTRHGEATVYQRDKVALVGGSVLVTPKTAEMALALLVSRIRRYSNTVLHNVSLPEGSKGHGRFERQVFGVLSERQFHAYAQAMRSQLQDLCDRAESGLELAADKKGGKRKACGIGIFVFRDD
Ga0302324_1002145845F099197N/AQLAIEMNHITQDVLSKLKVSPKEQQFAAMQAQKIKKRGWPSARLMAAINGAGDVLSTWRRDKRYRGADGSPRVLAIRGKGATLESLVRKCVPQMSLDEVLAYICSHGEAILYKGDRVALLGSAAVITQRTPEVTLAWMLTQFRHVADTTLRNTSVPAHLVKGTGMFQRQVAGWLSEKDFRLYTKEVFPQLQEMCAQLEAGLSIDRRAKRKANRKECGVGLFVYQDTGRIG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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