NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1021350

Scaffold Ga0307982_1021350


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1021350 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3828
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006034Metagenome383Y
F014668Metagenome261Y
F102232Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307982_10213502F014668GGAVANNVVGVSPVLQYSVKATIYLKDIHPLFEVLPISKSLNFKIQIFWNNSVATATHNGTAWTEQTSQYRAYNGTLPLMLNNITDGLNGAPTGTVRASVYVGDTCHDTTQKDFTGVSTGSVGKQVELHVQAVQMLPDMEKSYGLNHLRDVSYHDYYQFSLKNIAGGDSFNHLVSNAISNLKAVLIVPQPSNKNNNVNAFDDGLPQLMGHINNFNVLIGGLNVLMQDSRYTYQSFNNEFFNEFGVNGNQSPGLGSSLIDYKSWLKKPYYYVNCSRVPKNQQQAYRSLQIKGTNASVLTMDYVIYAIYEKNFTLDVISGDVKKVD
Ga0307982_10213503F102232N/AMNIALNLSSAQLRNLRNGKGIRISPAMFGSGVDMIIDPMNYNNLLKKLERGKGAVMSMGNDELEENEIQGTGLFAGAGKKSGKISRIKKARKWRCFSDETLRKGIDTGRYGYEQFKEATDPVGSELKKTGKKAIQGFFKMFGGEMEGDGFLRI
Ga0307982_10213505F006034N/ALYYIILEMLSNLDIDVLVVKMGIPNFKGCYYKDTLKKIEPNSSYIINLNSEYNEKNERNKGSHWIALITDDLKKAIYFDSYGEREPTQIKNLLKCNQYKLGHTSKNIQSLMSNLCGFFCLAFIYFLTVS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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