NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307982_1012569

Scaffold Ga0307982_1012569


Overview

Basic Information
Taxon OID3300031224 Open in IMG/M
Scaffold IDGa0307982_1012569 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #989
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5785
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae → environmental samples → Organic Lake phycodnavirus 2(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005070Metagenome413Y
F015658Metagenome253N
F030993Metagenome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0307982_101256911F015658GGAVNHDPYITIGKHLVHKQHLLGGKLQVRSPVNHNQVYGFKSQNITNNIKDILLQLHIKEPISFKDKLNEEEKNQLYMIGKRLHVSELFDIPSTTKSNEDKLKDEFYLLRGSIMAGNNKSQLLRKFKIVLLKMKNYILISLQEYNEILNILLELDI
Ga0307982_10125697F005070N/AVSPDNSVIIVCDQVLNEFSNLGILYALSPSVGIGSLIVDKPAYPIYSKLLNGSYNHLTFRILSSKTFRPIELIDPEINFIFSIK
Ga0307982_10125698F030993GAGVNLVDKHISLTSASLYFLWRNITTSNNKFSYTWIDDIVYDVEIPIGLYEISDIRSYFQFVMSQNNHVMTNTETGSTIYFIDFVVSKTNYSIDVLTYPVPASLPTGLLLP
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