| Basic Information | |
|---|---|
| Taxon OID | 3300031224 Open in IMG/M |
| Scaffold ID | Ga0307982_1000204 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45444 |
| Total Scaffold Genes | 65 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 54 (83.08%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Organic Lake | |||||||
| Coordinates | Lat. (o) | -68.457 | Long. (o) | 78.1911 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009218 | Metagenome / Metatranscriptome | 321 | Y |
| F037979 | Metagenome | 167 | Y |
| F065935 | Metagenome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307982_100020430 | F065935 | GAGG | MIVDMKDMSNKLYWTKGYEAGVELERERIIKMFQAKEANRTIMEALEYPYTAKELEEMIMEGEE |
| Ga0307982_100020432 | F037979 | N/A | MSYLFLGLDGEMSSSELSEGGKLIQIGVATEDGLMRSYTMNPGPCQWSEQAFAVHGITREKLSTSLSPEIVDVKLYEFLVELGADTKRRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRRTVDLNALCFALDYKEENGMPVKAETWKKRAKAYAIEKIGVENQHNAGWDSLMHIYCFEYLKGVIGATTRSD |
| Ga0307982_100020448 | F009218 | GAGG | MLQKTLIKMLDGVFFLKDEPESASGPDWKFRRKVIFGSYRLGFAMIIFGALTFLVDQWGVGVTLITGGVSLISIITTAYTLSASYEDVKLYKNEGTDY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |