NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1018390

Scaffold Ga0307931_1018390


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1018390 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2404
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015658Metagenome253N
F029560Metagenome188Y
F068475Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10183901F015658N/ATDPGIPKEIREKTSNVGLFTPQIVGTGYGMNTDNTYINIGKYLVHRNNLLGGKLQVRSPNKNQVYGFKSQNITNNIKDILLKLHKNEPISFKDVDKLNEQEKNQLYTVGKKLHVSELFDIPSTLKSNEDKLKDEFFLLRGSIMAGNNNPDLLRKFKIVLLKMKIIN
Ga0307931_10183904F029560N/AMKGGSLKPQEIKDFLQASYEKYAPKMIDDYVQDKSLSNLYGKVYVNQDLKKVVLAFRGTGMENLGTDWINNLIFAVSDPGYKLTPRYQTALKMYRKAMNKYQGYKFELLGHSQSGVIVNNLCSD
Ga0307931_10183905F068475GGAMINIQNRTGNPITEHKVDILDRLNPNMIIGRGVGQQLLIKNMRYK
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