NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1009871

Scaffold Ga0307931_1009871


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1009871 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4316
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020855Metagenome221N
F037291Metagenome / Metatranscriptome168Y
F068214Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10098711F020855N/AVFKNVDGLGQYQYNFQTPIQLPINCEMLISVTDAQLPNIIPNVTSNNKNISFFIPTFSKKFTIELRDDDGITDNVYNVNEFLAFVNANILLEASNQFSLYGEFQSTMSKIKWLSNFPFQIINTPNYPTTCIDLLGFKKNERNEVVYESSEVLLSSVLNPTYHITMPSCVNFTGTRFIFVKFNNISVNNLNGSGITDNAMVRIDNNAPFGYMILYRPSEVQLFIIRKQSINNLTFSLTNTLGENLDIFSNDAQITLKIEYMYKPEMRSMEEGTINY
Ga0307931_10098712F068214N/AMSLHHNTGALKPQQTNVIPPGKIIYVDETFQIDPPKYVAGEAFPRQGKELILAHFSYAHHNPSFTPVNAPSLPMNYGTYIYNIVDGYQ
Ga0307931_10098715F037291N/AMKQSKSIRDRVNVVHAFNPGFTKAFHESIKVDKPIKKELDKKVNIHRVKKDIVSAWSHNETAFGNLFEYDHKDKNADM
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