NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1005950

Scaffold Ga0307931_1005950


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1005950 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6568
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009455Metagenome317Y
F093000Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10059504F093000N/AMETQSTERNGIHFITHDKIEQFKKDPLFKNDELFEELKAKLYALSPISIINPKKNQNLLRSFTEENE
Ga0307931_10059509F009455N/AMISFTYIHIFSFEIYMEQLQISISPAQMTEIRKGMPIQIRHGSMGNGDVVISLRSEKAKKMVAAYKRGKGLRIQMDEDEVRASGLLGDSKKLGKKVEKGVVEHYN

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