NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307931_1003874

Scaffold Ga0307931_1003874


Overview

Basic Information
Taxon OID3300031208 Open in IMG/M
Scaffold IDGa0307931_1003874 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #47
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8925
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009455Metagenome317Y
F022329Metagenome214Y
F040417Metagenome161Y
F086650Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0307931_10038742F022329N/AMETHSIFKYTTERNGIHFIPHDKIEAFKKDTLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTPLLKKTNKITRRIYNGKNSDE
Ga0307931_10038744F009455N/AMEQIQLSISPAQMTKIRKGLTIQIKHDSMGNGDMVVSLHPENARKMAPAFKRGKGLRIQMDEDEVRASGLLGSLK
Ga0307931_10038745F086650N/AMLTYKQRLNQKYGLDKDTEHTLRELKRLTGVPIRIMKEVEKRGKGAYATNLGSVRLNDFSKNDDLRKGASKRLSKEQWSKARIYAFLFKS
Ga0307931_10038746F040417AGGAGMEQIDEVDAEERFKKDQEYINEFSTLNQHTCYSSYRDNYHGQYFFAHRNKTKCECGGIFTYDHRARHFKSQKHVNFISQ
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