NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308021_10032013

Scaffold Ga0308021_10032013


Overview

Basic Information
Taxon OID3300031141 Open in IMG/M
Scaffold IDGa0308021_10032013 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #351
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2240
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5596Long. (o)77.8957Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F015741Metagenome / Metatranscriptome252Y
F022754Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0308021_100320133F013820AGGAGMVPTIVGLIDKLMPGGKTYALMGLGVLMTVCQMGGWHIFSQEAWGLLGIGGAATWKMGQDRK
Ga0308021_100320134F022754AGGAGMLLIPAPSKGIDWTVNEVPTQIQIIHKSGLEVSYSAAPVSCNLKPRHKKEMIFRAPMDRCYSVFDLSSPRFVRHKNYWHKIKLGE
Ga0308021_100320135F002078AGGAGMDIGAMFEGQGWFAIIGQIVLIFTAVTGALPDKFVQKIPVLGTIWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKIRTRSGMPDVLDGM
Ga0308021_100320136F015741AGGAVVCLMFWTGCSFPLVELIPPVANFALGFYDHNDYYSKECLWYDEVKLNDKTKKWLLESNPPEIVSKDLSQVARNNDIYKEVCKKDKGVADKLKDKANRVIDKTLMATEE
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