| Basic Information | |
|---|---|
| Taxon OID | 3300031091 Open in IMG/M |
| Scaffold ID | Ga0308201_10042737 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1097 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Colorado | |||||||
| Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F019222 | Metagenome / Metatranscriptome | 231 | Y |
| F028304 | Metagenome / Metatranscriptome | 192 | Y |
| F037922 | Metagenome / Metatranscriptome | 167 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0308201_100427371 | F028304 | AGGAG | MARPGESREDIRRALADLGWEVRTDDEDSRAIMGAHGKYHLMVSFEGDEPTSVLISYVGRGGEILSRKWPGTEHLPTP |
| Ga0308201_100427372 | F019222 | AGGAG | MSEEELEQLEARGIFVKEYEERTLKAARLYSLLRQECGIEEPWHIMALTVCSFEQMHIKEGWEFVLANKQDIEDVGQLFERSSSPEEFRDGLIELKEQDLMEQLERSELDL |
| Ga0308201_100427373 | F037922 | N/A | QNLPKIETVEQARETLIEMEVEQEITAELDEWKATIKKHNDQEFSVSFSDYETGIINLWNASHILVEHGDHNLYLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |