NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0302310_10357566

Scaffold Ga0302310_10357566


Overview

Basic Information
Taxon OID3300030737 Open in IMG/M
Scaffold IDGa0302310_10357566 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)808
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019364Metagenome / Metatranscriptome230Y
F080348Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0302310_103575661F080348N/AAYAHFTSGRWASGGQPVEPIRQMLGGSVPSLVICAGSGSLCANGSTTALAHELSGPNAASVPPRIAPPNAVAAGLADTSALLHLILALSSRPGAGQALLLGTSGDRRFAAISLELP
Ga0302310_103575662F019364N/AMNVRIASAAYAVPPDGEAVEAVLERERDRVQATLAPLSPQARQKAAEGLGLSRVRVCGSQQPYDLVREASATAIAEAGIAGPDINLILDYSTFPGENLQSLSLAHKLSADLGAETSMNLSFKAGGCGALHLAIKTALGWMSTDESIQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.