| Basic Information | |
|---|---|
| Taxon OID | 3300030625 Open in IMG/M |
| Scaffold ID | Ga0210259_12061481 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO122-ANR120SO (Eukaryote Community Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 849 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Quebec | |||||||
| Coordinates | Lat. (o) | 47.3189 | Long. (o) | -71.212 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000097 | Metagenome / Metatranscriptome | 2311 | Y |
| F001666 | Metagenome / Metatranscriptome | 654 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210259_120614811 | F001666 | N/A | IMSIQISNSDKFLNQETALFDTKLLALGGERRVLADGESLHSEVPLHGLQGQTWRNVEYPSGLEYEGSIADYHVTDGTL |
| Ga0210259_120614812 | F000097 | N/A | GSFKKGLTVSVNGNKVTGKSTLKLGAVNVISHRRVNIKTPIMDITISNSDKFLNQETALFDEKLLALGSERRLLGSGESFHSEVPLHGLQGQTWRNVEYPSGLEYEGSISDYHVVSGNLFGSDFVFNQYKQ |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |