NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311354_11463447

Scaffold Ga0311354_11463447


Overview

Basic Information
Taxon OID3300030618 Open in IMG/M
Scaffold IDGa0311354_11463447 Open in IMG/M
Source Dataset NameII_Palsa_E3 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)606
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Algoriphagus(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3535Long. (o)19.0473Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002504Metagenome / Metatranscriptome553Y
F002536Metagenome / Metatranscriptome551Y

Sequences

Protein IDFamilyRBSSequence
Ga0311354_114634471F002504N/ATTFASIAAEEEDHIDHAMSILKAERALDAQRFDDKVYALHLEVMTTLAQMLARDDKDCGCELCHGGCVKPMLPNVGLTSSELRGASLQHYLRTLDALGLPGEMTLAWVSQLPV
Ga0311354_114634472F002536GAGMPVDFALVGHQETWRAAADVLAILRGPHHPPIPDDEVPHILPWIPPRAVCHIEARSVLGAKVDGLYIDSFIPPDRLDASFLRENL

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