NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272436_1001593

Scaffold Ga0272436_1001593


Overview

Basic Information
Taxon OID3300030523 Open in IMG/M
Scaffold IDGa0272436_1001593 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Richard Nunatak white sandstone
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36816
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (94.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.9Long. (o)159.8Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035137Metagenome172Y
F075492Metagenome118Y
F078022Metagenome116Y
F098337Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272436_100159338F078022GGAMPDGDYITLAQASRLAGLQTSGALYRAVQTGRLKTVTKMAGPRIVRLTTRAWLREYLDSLRREA
Ga0272436_100159339F075492AGGMTDNPNPTRTIGESSVNQTTTDEILAVIALEEPRGATADQVARAIGLGFDETLMRDALEELVDHGLLNQFGIGHKAVYTLNARA
Ga0272436_100159348F098337AGGAGMRMTPQTLAATLALFDGDADEATVVARIVALRQDPDWRVALHNGSKRCAIALTHGPTNHLYRVYLDRVKGAEGVVWRRVA
Ga0272436_10015938F035137GAGGMRGKWERKSDTLWTYRLADAARPYGSVVQYKDTARSYGDWDAMVTSGRLDDDTTIAEGVSFDDARAALEQHAQQQQR
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