NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268243_1002050

Scaffold Ga0268243_1002050


Overview

Basic Information
Taxon OID3300030510 Open in IMG/M
Scaffold IDGa0268243_1002050 Open in IMG/M
Source Dataset NameBulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3321
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Agave Microbial Communities From California, Usa, And Mexico

Source Dataset Sampling Location
Location NameMexico: Magueyal, Guanajuato
CoordinatesLat. (o)21.195Long. (o)-100.439Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009602Metagenome / Metatranscriptome315Y
F020437Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0268243_10020502F020437AGGAGGMTEPQKLTDLVPVEVLTEVNTAIAVLEIQGPAITEALRQLDRATTMAWKAVNMLGVTDEEWELVKREIGIERGWDAAYQLVSTFDLPGTQPSVDVTADSP
Ga0268243_10020503F009602GAGGMADPRRMTPEEHGEAHALLVRVVTDPDWQAASQALVDLMGKLLAVRRLLEAEERLPKREPRAEPM

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