NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311360_10983014

Scaffold Ga0311360_10983014


Overview

Basic Information
Taxon OID3300030339 Open in IMG/M
Scaffold IDGa0311360_10983014 Open in IMG/M
Source Dataset NameIII_Bog_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001490Metagenome / Metatranscriptome685Y
F005331Metagenome / Metatranscriptome404Y

Sequences

Protein IDFamilyRBSSequence
Ga0311360_109830141F001490N/AMKHSDGTQLLHRIAQIQHMEPGKLCVMRQGPNGPYHNLQWREDGKAISRYVPSDQVAAVAQNTANYEQFQALVAQYAQLIIQQTRAERTTGLKKKTSPPRSSWLKTRRSSN
Ga0311360_109830142F005331AGGAGMARFQGQTPNGVAVQQLEVLVRTAVFKSANTLVGFLLQEAANRIDAAYQPKPGQQAKGRASTR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.