NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311350_11942119

Scaffold Ga0311350_11942119


Overview

Basic Information
Taxon OID3300030002 Open in IMG/M
Scaffold IDGa0311350_11942119 Open in IMG/M
Source Dataset NameII_Fen_N1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)519
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032450Metagenome180Y
F080558Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0311350_119421191F032450GAGGVEPNWKPLEAKLGALRCAGFMFMGRSNGINHYKHGLSRRYLFLDDVGRAYESVRRNQFREIPFDEALARVEGPLKELGETLETAYDDAYISRKETALRAAGIEVIRLRIVPEDTVV
Ga0311350_119421192F080558N/AGPGARTSLVSANQQALPTAAELRELVDLKNELNRMYREVAATRAQEPPPPQQ

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