| Basic Information | |
|---|---|
| Taxon OID | 3300029999 Open in IMG/M |
| Scaffold ID | Ga0311339_10008536 Open in IMG/M |
| Source Dataset Name | I_Palsa_E3 coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16338 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Abisko, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3535 | Long. (o) | 19.0473 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014638 | Metagenome / Metatranscriptome | 261 | Y |
| F058302 | Metagenome / Metatranscriptome | 135 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0311339_100085364 | F014638 | AGGA | VGTAVSVPPVAATDVPLSGIDKLGFDAFEVTVAVPGNVPADVGANLTVNVVLWPDVNVTGVVIPEMLNPVPTAATAEMVALVPPVFLIVSVWLEVCPTVMFV |
| Ga0311339_100085365 | F058302 | N/A | VPTEVGAKVTLNVVLCPAVSVTGGVIPEMMNPAPVSPTAEIVALVPPVFLIVSVWLEVCPTVMFV |
| Ga0311339_100085366 | F058302 | AGG | VPAEVGANFTVIVALCPAVNVTGGVIPEILNPVPDTATAEIVALVAPVFSIVSVWLEVCPVVMFV |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |