NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302276_10049676

Scaffold Ga0302276_10049676


Overview

Basic Information
Taxon OID3300029992 Open in IMG/M
Scaffold IDGa0302276_10049676 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2540
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F007956Metagenome / Metatranscriptome341N

Sequences

Protein IDFamilyRBSSequence
Ga0302276_100496762F004581GGAGGMQHAEIYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISTNDITLATTLLNSVYGYPAGKQAVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLSYTLLPLPGREIETANLLKATAAYSIERAEAHSRLIPPSTRHPVQLER
Ga0302276_100496763F007956N/AYDALSPEQKAACDKDFNSYLDRFTSPLEAKVGETREDAILRAKKEYCVARQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVSKEFLATAFYHNAAAAKGLTAFEKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPEKRQELAAIFGKCAWYHSNQSGRTPEEREQRRAARTKTTQELER
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