NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311347_10014945

Scaffold Ga0311347_10014945


Overview

Basic Information
Taxon OID3300029923 Open in IMG/M
Scaffold IDGa0311347_10014945 Open in IMG/M
Source Dataset NameII_Fen_E1 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5124
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040210Metagenome / Metatranscriptome162Y
F088331Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0311347_100149454F040210AGGAGMKRSLRALLLLVGLVGTFAYAAIPKAPAPDGPMPLCPPKHPNCDQ
Ga0311347_100149457F088331N/AVEVSFVAPGLEPTADVFDFLRYLALAEPQDATPVFSRLTASDDYNVIVTAREPSQIPAAFVTSSYVLSLGAPKTPKPIPATPLP

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